Isoleucyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Isoleucyl-Trna Synthetase
  Conformer 1
(PDB)
1qu3 (A)
  Conformer 2
(PDB)
1ffy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 769 1.09   8 - 184   188 - 190   192 - 202   208 - 216   227 - 231   233 - 233   239 - 249   253 - 254   260 - 264   266 - 287   290 - 292   298 - 303   311 - 328   330 - 337   383 - 386   391 - 395   401 - 879
2 94 1.35   185 - 187   191 - 191   203 - 207   217 - 226   232 - 232   234 - 238   250 - 252   255 - 259   265 - 265   288 - 289   293 - 297   304 - 310   329 - 329   338 - 373   387 - 390   396 - 400

Sequence


           ________________________________________________________________________________________________________________________ 
 1qu3(A) : *DYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEF 
         :                                                                                                                          
 1ffy(A) : MDYEKTLLMPKTDFPMRGGLPNKEPQIQEKWDAEDQYHKALEKNKGNETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEF 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________184___190_________202__207______216_______226__231____238__ 
 1qu3(A) : REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSN 
         :                                                                                                                          
 1ffy(A) : REKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVDADAKFIIWTTTPWTIPSN 
           _____________________________________________________________184___190_________202__207______216_______226__231____238__ 

           ______249_______259_263_____________________287_______297__________310_______________328______337_______________________ 
 1qu3(A) : VAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG 
         :                                                                                                                          
 1ffy(A) : VAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASIKLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGG 
           ______249_______259_263_____________________287_______297__________310_______________328______337_______________________ 

           _________372_______________390__395__400________________________________________________________________________________ 
 1qu3(A) : QFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 
         :                                                                                                                          
 1ffy(A) : QFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETV 
           _________372_______________390__395__400________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qu3(A) : NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSL 
         :                                                                                                                          
 1ffy(A) : NHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qu3(A) : GNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 
         :                                                                                                                          
 1ffy(A) : GNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1qu3(A) : LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNAS 
         :                                                                                                                          
 1ffy(A) : LDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVHLADMPKVVEVDQALLDKWRTFMNLRDDVNRALETARNEKVIGKSLEAKVTIASNDKFNAS 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________                                            
 1qu3(A) : EFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHA************************************                                            
         :                                                                                                                          
 1ffy(A) : EFLTSFDALHQLFIVSQVKVVDKLDDQATAYEHGDIVIEHADGEKCERCWNYSEDLGAVDELTHLCPRCQQVVKSLV                                            
           _____________________________________________________________________________                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.1
Translation
(A)
0.3
Closure
(%)
77.6
Bending Residues
( green )
  184 - 185
  187 - 188
  190 - 192
  202 - 203
  207 - 208
  216 - 217
  226 - 227
  231 - 234
  238 - 239
  249 - 255
  259 - 260
  263 - 266
  287 - 293
  297 - 298
  300 - 304
  310 - 311
  328 - 330
  337 - 338
  372 - 387
  390 - 391
  395 - 396
  400 - 401
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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