Jumonji Domain-Containing Protein 2A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Jumonji Domain-Containing Protein 2A
  Conformer 1
(PDB)
2gfa (B)
  Conformer 2
(PDB)
2gfa (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 54 0.89   898 - 925   981 - 1006
2 48 0.29   926 - 980

Sequence


           ___________________________924_______________________________________________980_______________________________          
 2gfa(B) : *LQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSgPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDEELP          
         :                                                                                                                          
 2gfa(A) : ALQSITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIV-gPPAEGEVVQVRWTDGQVYGAKFVASHPIQMYQVEFEDGSQLVVKRDDVYTLDE***          
           ___________________________924_______________________________________________980_______________________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.2
Translation
(A)
1.3
Closure
(%)
77.2
Bending Residues
( green )
  924 - 926
  980 - 981
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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