47 Kda Membrane Antigen

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 47 Kda Membrane Antigen
  Conformer 1
(PDB)
1o75 (B)
  Conformer 2
(PDB)
1o75 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 314 1.23   9 - 331
2 80 0.63   332 - 411

Sequence


           ________________________________________________________________________________________________________________________ 
 1o75(B) : ETSYGYATLSYADYWAGELGQSRDVLLAdRAGDLDAGMFDAVSRATHGHGAFRQQFQYAVEVLGEKVLSKQETEDSRGRKKWEYETDPSVTKMVRASASFQDLGEDGEIKFEAVEGAVAL 
         :                                                                                                                          
 1o75(A) : ETSYGYATLSYADYWAGELGQSRDVLLAd----LDAGMFDAVSRATHGHGAFRQQFQYAVEVLGEKVLSKQETEDSRGRKKWEYETDPSVTKMVRASASFQDLGEDGEIKFEAVEGAVAL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1o75(B) : ADRASSFMVDSEEYKITNVKVHGMKFVPVAVPHELKGIAKEKFHFVEDSRVTENTNGLKTMLTEDSFSARKVSSMESPHDLVVDTVGTGYHSRFGSDAEASVMLKRADGSELSHREFIDY 
         :                                                                                                                          
 1o75(A) : ADRASSFMVDSEEYKITNVKVHGMKFVPVAVPHELKGIAKEKFHFVEDSRVTENTNGLKTMLTEDSFSARKVSSMESPHDLVVDTVGTGYHSRFGSDAEASVMLKRADGSELSHREFIDY 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________331________________________________________ 
 1o75(B) : VMNFNTVRYDYYGDDASYTNLMASYGTKHSADSWWKTGRVPRISCGINYGFDRFKGSGPGYYRLTLIANGYRDVVADVRFLPKYEGNIDIGLKGKVLTIGGADAETLMDAAVDVFADGQP 
         :                                                                                                                          
 1o75(A) : VMNFNTVRYDYYGDDASYTNLMASYGTKHSADSWWKTGRVPRISCGINYGFDRFKGSGPGYYRLTLIANGYRDVVADVRFLPKYEGNIDIGLKGKVLTIGGADAETLMDAAVDVFADGQP 
           _____________________________________________________________________________331________________________________________ 

           ___________________________________________                                                                              
 1o75(B) : KLVSDQAVSLGQNVLSADFTPGTEYTVEVRFKEFGSVRAKVV*                                                                              
         :                                                                                                                          
 1o75(A) : KLVSDQAVSLGQNVLSADFTPGTEYTVEVRFKEFGSVRAKVVA                                                                              
           ___________________________________________                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
25.7
Translation
(A)
0.3
Closure
(%)
88.4
Bending Residues
( green )
  331 - 332
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download