Kv4 Potassium Channel-Interacting Protein Kchip1b

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Kv4 Potassium Channel-Interacting Protein Kchip1b
  Conformer 1
(PDB)
1s6c (A)
  Conformer 2
(PDB)
1s1e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 113 1.1   41 - 130   149 - 172   186 - 189   192 - 198
2 48 2.33   131 - 148   173 - 185   190 - 191   200 - 214

Sequence


           __________________________________________________________________________________________130_______________148_________ 
 1s6c(A) : *LEQLEAQTNFTKRELQVLYRGFKNE-pSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 
         :                                                                                                                          
 1s1e(A) : GLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDM 
           __________________________________________________________________________________________130_______________148_________ 

           ____________172__________185_189______198____________________                                                            
 1s6c(A) : MG-----------pRQHVDVFFQKMDKNKDGIVTLDEFLES-qEDDNIMRSLQLFQNVM**                                                            
         :                                                                                                                          
 1s1e(A) : MGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVMVE                                                            
           ____________172__________185_189______198____________________                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.3
Translation
(A)
0.3
Closure
(%)
89.7
Bending Residues
( green )
  130 - 131
  148 - 149
  172 - 173
  185 - 186
  189 - 192
  198 - 200
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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