L-Allo-Threonine Aldolase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name L-Allo-Threonine Aldolase
  Conformer 1
(PDB)
1lw5 (A)
  Conformer 2
(PDB)
2fm1 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 235 0.23   8 - 254
2 90 0.25   4 - 7   255 - 341

Sequence


           ______7_________________________________________________________________________________________________________________ 
 1lw5(A) : *IDLRSDTVTKPTEE-rKA-aQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGT-gNQVSI-aHTQRGDEVILEADSHIFWYEVGA-aVLSGV-pHPVPGKNGA-dPDDVRKAIR 
         :                                                                                                                          
 2fm1(B) : MIDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMDPDDVRKAIR 
           ______7_________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1lw5(A) : PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV-fCLSgLCAPVGSVVVGDRDFIERARKARK-lGGG-rQAGVLAAAGI 
         :                                                                                                                          
 2fm1(B) : PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSgLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGI 
           ________________________________________________________________________________________________________________________ 

           __________254_________________________________________________________________________________________                   
 1lw5(A) : IALTK-vDRLKEDHENARFLALKLKEIGYSVNPEDVKTN-vILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                   
         :                                                                                                                          
 2fm1(B) : IALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRKFS                   
           __________254_________________________________________________________________________________________                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
-0.1
Closure
(%)
82.5
Bending Residues
( green )
  7 - 8
  254 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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