Leishmania Major Homolog Of Programmed Cell Death 6 Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Leishmania Major Homolog Of Programmed Cell Death 6 Protein
  Conformer 1
(PDB)
1y1x (A)
  Conformer 2
(PDB)
1y1x (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 100 0.52   52 - 61   99 - 188
2 68 0.76   14 - 51   62 - 98

Sequence


           ________________________________________51__55_________________________________________98_______________________________ 
 1y1x(A) : PTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQ 
         :                                                                                                                          
 1y1x(B) : *TSTGVYAPS-------qELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQ 
           ________________________________________51__55_________________________________________98_______________________________ 

           ______________________________________________________________                                                           
 1y1x(A) : TFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSIL                                                           
         :                                                                                                                          
 1y1x(B) : TFQALMRKFDRQRRGSLGFDDYVELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGGSVSIL                                                           
           ______________________________________________________________                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.7
Translation
(A)
0.2
Closure
(%)
82.6
Bending Residues
( green )
  51 - 52
  55 - 62
  98 - 99
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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