Leucyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Leucyl-Trna Synthetase
  Conformer 1
(PDB)
2byt (D)
  Conformer 2
(PDB)
2bte (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 591 0.42   3 - 225   278 - 282   286 - 295   417 - 578   637 - 637   639 - 819   833 - 838   866 - 866   868 - 869
2 168 0.4   226 - 277   283 - 285   304 - 416
3 59 0.78   579 - 636   638 - 638
4 45 0.61   820 - 832   839 - 865   867 - 867   870 - 873

Sequence


           ________________________________________________________________________________________________________________________ 
 2byt(D) : MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 
         :                                                                                                                          
 2bte(D) : MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________225_______________ 
 2byt(D) : WDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKE 
         :                                                                                                                          
 2bte(D) : WDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKE 
           ______________________________________________________________________________________________________225_______________ 

           __________________________________277__282________293___________________________________________________________________ 
 2byt(D) : VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKK 
         :                                                                                                                          
 2bte(D) : VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKK 
           __________________________________277__282________293___________________________________________________________________ 

           _____________________________________________________416________________________________________________________________ 
 2byt(D) : VIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 
         :                                                                                                                          
 2bte(D) : VIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 
           _____________________________________________________416________________________________________________________________ 

           _______________________________________________________________________________________________578______________________ 
 2byt(D) : ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTR 
         :                                                                                                                          
 2bte(D) : ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTR 
           _______________________________________________________________________________________________578______________________ 

           _________________________________636____________________________________________________________________________________ 
 2byt(D) : IRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRE 
         :                                                                                                                          
 2bte(D) : IRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRE 
           _________________________________636____________________________________________________________________________________ 

           ________________________________________________________________________________________________819__________832___838__ 
 2byt(D) : LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLE 
         :                                                                                                                          
 2bte(D) : LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLE 
           ________________________________________________________________________________________________819__________832___838__ 

           ______________________865___________                                                                                     
 2byt(D) : VARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV                                                                                     
         :                                                                                                                          
 2bte(D) : VARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV                                                                                     
           ______________________865___________                                                                                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
0.0
Closure
(%)
77.6
Bending Residues
( green )
  225 - 226
  277 - 278
  282 - 283
  285 - 286
  293 - 304
  416 - 417
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
11.3
Translation
(A)
-0.2
Closure
(%)
43.6
Bending Residues
( green )
  578 - 579
  636 - 639
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( violet )
4
Rotation Angle
(deg)
4.0
Translation
(A)
0.1
Closure
(%)
75.5
Bending Residues
( green )
  819 - 820
  832 - 833
  838 - 839
  865 - 870
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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