Leucyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Leucyl-Trna Synthetase
  Conformer 1
(PDB)
2byt (D)
  Conformer 2
(PDB)
2bte (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 586 0.44   3 - 226   228 - 229   272 - 273   279 - 282   286 - 296   332 - 334   415 - 576   637 - 814
2 159 0.36   227 - 227   230 - 271   274 - 278   283 - 285   304 - 331   335 - 414
3 60 0.55   577 - 636
4 60 0.5   815 - 874

Sequence


           ________________________________________________________________________________________________________________________ 
 2byt(D) : MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 
         :                                                                                                                          
 2bte(A) : MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYD 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________________221___________________ 
 2byt(D) : WDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKE 
         :                                                                                                                          
 2bte(A) : WDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKE 
           __________________________________________________________________________________________________221___________________ 

           ____________________________271________282________293___________________________________331_____________________________ 
 2byt(D) : VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKK 
         :                                                                                                                          
 2bte(A) : VRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKK 
           ____________________________271________282________293___________________________________331_____________________________ 

           ___________________________________________________414__________________________________________________________________ 
 2byt(D) : VIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 
         :                                                                                                                          
 2bte(A) : VIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFY 
           ___________________________________________________414__________________________________________________________________ 

           _____________________________________________________________________________________________576________________________ 
 2byt(D) : ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTR 
         :                                                                                                                          
 2bte(A) : ETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTR 
           _____________________________________________________________________________________________576________________________ 

           _________________________________636____________________________________________________________________________________ 
 2byt(D) : IRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRE 
         :                                                                                                                          
 2bte(A) : IRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRE 
           _________________________________636____________________________________________________________________________________ 

           ___________________________________________________________________________________________814__________________________ 
 2byt(D) : LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLE 
         :                                                                                                                          
 2bte(A) : LYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLE 
           ___________________________________________________________________________________________814__________________________ 

           ____________________________________                                                                                     
 2byt(D) : VARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV                                                                                     
         :                                                                                                                          
 2bte(A) : VARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV                                                                                     
           ____________________________________                                                                                     

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.5
Translation
(A)
0.1
Closure
(%)
70.7
Bending Residues
( green )
  221 - 230
  271 - 280
  282 - 288
  293 - 304
  331 - 335
  414 - 415
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
8.0
Translation
(A)
0.3
Closure
(%)
64.1
Bending Residues
( green )
  576 - 577
  636 - 637
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( violet )
4
Rotation Angle
(deg)
3.9
Translation
(A)
0.5
Closure
(%)
88.2
Bending Residues
( green )
  814 - 815
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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