Loc - Lambda 1 Type Light-Chain Dimer

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Loc - Lambda 1 Type Light-Chain Dimer
  Conformer 1
(PDB)
1bjm (A)
  Conformer 2
(PDB)
4bjl (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 106 1.38   3 - 108
2 103 0.61   109 - 211

Sequence


           _________________________________________________________________________________________________________108____________ 
 1bjm(A) : XSVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVFGTGTKVTVLGQPKANPTVT 
         :                                                                                                                          
 4bjl(A) : XSVLTQPPSASGTPGQRVTISCSGSSSNIGENSVTWYQHLSGTAPKLLIYEDNSRASGVSDRFSASKSGTSASLAISGLQPEDETDYYCAAWDDSLDVAVFGTGTKVTVLGQPKANPTVT 
           _________________________________________________________________________________________________________108____________ 

           ________________________________________________________________________________________________                         
 1bjm(A) : LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS                         
         :                                                                                                                          
 4bjl(A) : LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS                         
           ________________________________________________________________________________________________                         

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.0
Translation
(A)
-0.3
Closure
(%)
59.6
Bending Residues
( green )
  108 - 111
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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