Lysr-Type Regulatory Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysr-Type Regulatory Protein
  Conformer 1
(PDB) 		1ixc (A)
  Conformer 2
(PDB) 		1iz1 (P)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 21 0.31   71 - 91
2 60 0.38   4 - 70
3 197 0.41   92 - 290

Sequence


           ____________________________________________________________________70___________________91_____________________________ 
 1ixc(A) : *EFRQLKYFIAVAEAGN-aAAAKRLHVSQPPITRQ-qALEADLGVVLLE-----iELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
         :                                                                                                                          
 1iz1(P) : MEFRQLKYFIAVAEAGNMAAAAKRLHVSQPPITRQMQALEADLGVVLLERSHRGIELTAAGHAFLEDARRILELAGRSGDRSRAAARGDVGELSVAYFGTPIYRSLPLLLRAFLTSTPTA 
           ____________________________________________________________________70___________________91_____________________________ 

           ________________________________________________________________________________________________________________________ 
 1ixc(A) : TVSLTH-tKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALT-aGAASS 
         :                                                                                                                          
 1iz1(P) : TVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGAASS 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________                                                                   
 1ixc(A) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSAKD                                                                   
         :                                                                                                                          
 1iz1(P) : IVPASVAAIRWPDIAFARIVGTRVKVPISCIFRKEKQPPILARFVEHVRRSA**                                                                   
           ______________________________________________________                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		12.6
Translation
(A) 		0.1
Closure
(%) 		29.9
Bending Residues
( green ) 		  70 - 71
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		10.7
Translation
(A) 		0.0
Closure
(%) 		59.5
Bending Residues
( green ) 		  91 - 92
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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