Lysyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysyl-Trna Synthetase
  Conformer 1
(PDB)
1bbu (A)
  Conformer 2
(PDB)
1bbw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 375 1.08   17 - 321   383 - 386   396 - 399   413 - 414   418 - 500
2 86 0.6   322 - 382   387 - 395   400 - 412   415 - 417

Sequence


           ________________________________________________________________________________________________________________________ 
 1bbu(A) : VVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKT 
         :                                                                                                                          
 1bbw(A) : VVDLNNELKTRREKLANLREQGIAFPNDFRRDHTSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDDLPEGVYNEQFKKWDLGDILGAKGKLFKT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1bbu(A) : KTGELSIHCTELRLLTKALRPLPDdQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGAAARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFE 
         :                                                                                                                          
 1bbw(A) : KTGELSIHCTELRLLTKALRPLPd-QEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIP---aARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFE 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________321_______________________________________________________ 
 1bbu(A) : INRNFRNEGISVRHNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFE 
         :                                                                                                                          
 1bbw(A) : INRNFRNEGISV-hNPEFTMMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIKKYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFE 
           ______________________________________________________________321_______________________________________________________ 

           379____386______395______________412__417_______________________________________________________________________________ 
 1bbu(A) : EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAGDDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVIL 
         :                                                                                                                          
 1bbw(A) : EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQV------------yDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVIL 
           379____386______395______________412__417_______________________________________________________________________________ 

           ______                                                                                                                   
 1bbu(A) : FPAMRP                                                                                                                   
         :                                                                                                                          
 1bbw(A) : FPAMRP                                                                                                                   
           ______                                                                                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.0
Translation
(A)
0.4
Closure
(%)
97.0
Bending Residues
( green )
  321 - 323
  379 - 383
  386 - 387
  395 - 400
  412 - 415
  417 - 418
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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