Lysyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lysyl-Trna Synthetase
  Conformer 1
(PDB)
1e22 (A)
  Conformer 2
(PDB)
1lyl (B)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 0.5   164 - 166   171 - 171   175 - 181   185 - 291   296 - 318   395 - 395   422 - 453   457 - 492   494 - 499
2 143 0.38   17 - 151   167 - 170   174 - 174   183 - 184   493 - 493
3 106 0.39   292 - 295   319 - 394   396 - 418   454 - 456

Sequence


           ________________________________________________________________________________________________________________________ 
 1e22(A) : AIDFNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT 
         :                                                                                                                          
 1lyl(B) : ***FNDELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKT 
           ________________________________________________________________________________________________________________________ 

           __________________151__________170________181___________________________________________________________________________ 
 1e22(A) : QTGELSIHCTELRLLTKALRPLPd-QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFE 
         :                                                                                                                          
 1lyl(B) : QTGELSIHCTELRLLTKALRPLPDdQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFE 
           __________________151__________170________181___________________________________________________________________________ 

           ________________________________291_295____________________318__________________________________________________________ 
 1e22(A) : INRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFD 
         :                                                                                                                          
 1lyl(B) : INRNFRNEGISVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFD 
           ________________________________291_295____________________318__________________________________________________________ 

           _______________394_____________________418________________________________453____________________________________492____ 
 1e22(A) : EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVIL 
         :                                                                                                                          
 1lyl(B) : EVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVIL 
           _______________394_____________________418________________________________453____________________________________492____ 

           ______                                                                                                                   
 1e22(A) : FPAMRP                                                                                                                   
         :                                                                                                                          
 1lyl(B) : FPAMRP                                                                                                                   
           ______                                                                                                                   

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.1
Translation
(A)
-0.3
Closure
(%)
96.9
Bending Residues
( green )
  151 - 167
  170 - 175
  181 - 185
  492 - 494
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
3.5
Translation
(A)
0.0
Closure
(%)
94.7
Bending Residues
( green )
  291 - 292
  295 - 296
  318 - 319
  394 - 396
  418 - 422
  453 - 454
  456 - 457
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download