Major Pepsin Inhibitor Pi-3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Pepsin Inhibitor Pi-3
  Conformer 1
(PDB)
1f34 (B)
  Conformer 2
(PDB)
1f32 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 81 0.69   4 - 15   22 - 29   66 - 146
2 42 0.53   16 - 21   30 - 65

Sequence


           _____________15____21______29__________________________________65_______________________________________________________ 
 1f34(B) : QFLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTKPPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQEN 
         :                                                                                                                          
 1f32(A) : *FLFSMSTGPFICTVKDNQVFVANLPWTMLEGDDIQVGKEFAARVEDCTNVKHDMAPTCTKPPPFCGPQDMKMFNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQ--- 
           _____________15____21______29__________________________________65_______________________________________________________ 

           __________________                                                                                                       
 1f34(B) : QPpAGGLSPPPPPSFCTV                                                                                                       
         :                                                                                                                          
 1f32(A) : -------sPPPPPSFCTV                                                                                                       
           __________________                                                                                                       

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
0.6
Closure
(%)
78.0
Bending Residues
( green )
  15 - 16
  21 - 22
  29 - 30
  65 - 66
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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