Major Allergen I Polypeptide, Fused Chain 2, Chain 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Major Allergen I Polypeptide, Fused Chain 2, Chain 1
  Conformer 1
(PDB)
1puo (B)
  Conformer 2
(PDB)
1zkr (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 46 0.26   95 - 112   135 - 162
2 22 0.19   113 - 134

Sequence


           _______________________________________________________________________________________112___________________134________ 
 1puo(B) : ETCPIFYDVFFAVANGNELLLDLSLTKVNATEPERTAMKKIQDCYVENGLISRVLDGLVMTTISSSKDCMeICPAVKRDVDLFLTGTPDEYVEQVAQYKALPVVLENARILKNCVDAKMT 
         :                                                                                                                          
 1zkr(A) : *********************************************************************MEICPAVKRDVDLFLTGTPDEYVEQVAQYKALPVVLENARILKNCVDAKMT 
           ________________________________________________________________________________________20____________________42________ 

           _______________________________________________________________________________________________                          
 1puo(B) : EEDKENALSLLDKIYTSPLCLE*************************************************************************                          
         :                                                                                                                          
 1zkr(A) : EEDKENALSLLDKIYTSPLCVKMAETCPIFYDVFFAVANGNELLLDLSLTKVNATEPERTAMKKIQDCYVENGLISRVLDGLVMTTISSSKDCMG                          
           _______________________________________________________________________________________________                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
3.0
Translation
(A)
0.4
Closure
(%)
88.1
Bending Residues
( green )
  112 - 113
  134 - 135
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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