Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Maltose/maltodextrin Transport Atp-Binding Protein Malk
  Conformer 1
(PDB) 		1q1e (A)
  Conformer 2
(PDB) 		1q12 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 1.96   6 - 79   81 - 82   149 - 218
2 67 1.09   80 - 80   83 - 148
3 148 0.76   219 - 366

Sequence


           __________________________________________________________________________79____________________________________________ 
 1q1e(A) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
         :                                                                                                                          
 1q12(C) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 
           __________________________________________________________________________79____________________________________________ 

           ______________________148___________________________________________________________________218_________________________ 
 1q1e(A) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
         :                                                                                                                          
 1q12(C) : AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNFLP 
           ______________________148___________________________________________________________________218_________________________ 

           ________________________________________________________________________________________________________________________ 
 1q1e(A) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
         :                                                                                                                          
 1q12(C) : VKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTACR 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1q1e(A) : RLHKEPG                                                                                                                  
         :                                                                                                                          
 1q12(C) : RLHKEPG                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		29.8
Translation
(A) 		-2.7
Closure
(%) 		30.5
Bending Residues
( green ) 		  79 - 85
  148 - 149
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		17.0
Translation
(A) 		-0.3
Closure
(%) 		59.6
Bending Residues
( green ) 		  218 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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