DynDom - Protein Domain Motions

Maltose/maltodextrin Transport Atp-Binding Protein Malk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Maltose/maltodextrin Transport Atp-Binding Protein Malk
Conformer 1 (PDB)	1q12 (C)
Conformer 2 (PDB)	2awn (B)
Window Length	15
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	90	0.57	11 - 81 200 - 218
2	65	0.75	89 - 153
3	46	0.57	154 - 199
4	145	0.97	219 - 363

Sequence

`______________________________________________________________________________81________________________________________` `1q12(C) : VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL` `:` `2awn(B) : ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL` `______________________________________________________________________________81________________________________________` `_________________________149______________________________________________198_________________218_______________________` `1q12(C) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF` `:` `2awn(B) : QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIGSPKMNF` `_________________________149______________________________________________198_________________218_______________________` `________________________________________________________________________________________________________________________` `1q12(C) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA` `:` `2awn(B) : LPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIHIQIPSIRQNLVYRQNDVVLVEEGATFAIGLPPERCHLFREDGTA` `________________________________________________________________________________________________________________________` `______________` `1q12(C) : CRRLHKEPG***` `:` `2awn(B) : CRRLHKEPGVASAS` `______________`

Morph

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Domain Pairs

Fixed Domain	Moving Domain	Rotation Angle	Translation (A)	Closure	Bending Residues
1	2	8.1	0.4	98.2	81 - 91	Bending Region Analysis
1	3	5.9	-0.2	91.6	198 - 201	Bending Region Analysis
1	4	8.0	-0.2	29.4	218 - 219	Bending Region Analysis
3	2	10.8	0.2	27.6	149 - 155	Bending Region Analysis