Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB)
1k20 (B)
  Conformer 2
(PDB)
1wpp (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 0.31   4 - 194
2 115 0.47   195 - 309

Sequence


           ________________________________________________________________________________________________________________________ 
 1k20(B) : SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSA 
         :                                                                                                                          
 1wpp(A) : SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETASPLYMRLEPVGSA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________193________________________________________________ 
 1k20(B) : SSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIE 
         :                                                                                                                          
 1wpp(A) : SSIVYRMFKEHGVAVPKEIAGLMLSGLISDTLLLKSPTTHPTDKVIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIE 
           _____________________________________________________________________193________________________________________________ 

           ______________________________________________________________________                                                   
 1k20(B) : KAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA                                                   
         :                                                                                                                          
 1wpp(A) : KAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA                                                   
           ______________________________________________________________________                                                   

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.2
Translation
(A)
0.0
Closure
(%)
77.4
Bending Residues
( green )
  193 - 198
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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