Manganese-Dependent Inorganic Pyrophosphatase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Manganese-Dependent Inorganic Pyrophosphatase
  Conformer 1
(PDB)
2haw (B)
  Conformer 2
(PDB)
1k23 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 183 0.42   4 - 189
2 116 0.56   190 - 305

Sequence


           ________________________________________________________________________________________________________________________ 
 2haw(B) : MEKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTA 
         :                                                                                                                          
 1k23(C) : *EKILIFGHQNPDTDTICSAIAYADLKNKLGFNAEPVRLGQVNGETQYALDYFKQESPRLVETAANEVNGVILVDHNERQQSIKDIEEVQVLEVIDHHRIANFETAEPLYYRAEPVGCTA 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________187_____________________________________________________ 
 2haw(B) : TILNKMYKENNVKIEKEIAGLMLSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLNMLKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISK 
         :                                                                                                                          
 1k23(C) : TILNK-yKENNVKIEKEIAGL-lSAIISDSLLFKSPTCTDQDVAAAKELAEIAGVDAEEYGLN-lKAGADLSKKTVEELISLDAKEFTLGSKKVEIAQVNTVDIEDVKKRQAELEAVISK 
           ________________________________________________________________187_____________________________________________________ 

           ____________________________________________________________________                                                     
 2haw(B) : VVAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDAMA                                                     
         :                                                                                                                          
 1k23(C) : VVAEKNLDLFLLVITDILENDSLALAIGNEAAKVEKAFNVTLENNTALLKGVVSRKKQVVPVLTDAa*                                                     
           ____________________________________________________________________                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
82.9
Translation
(A)
-1.4
Closure
(%)
93.6
Bending Residues
( green )
  187 - 193
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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