Mannan-Binding Lectin Serine Protease 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Mannan-Binding Lectin Serine Protease 2
  Conformer 1
(PDB)
1q3x (A)
  Conformer 2
(PDB)
1q3x (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 249 0.28   432 - 684
2 61 0.59   368 - 431

Sequence


           ___________________________________________________________________431__________________________________________________ 
 1q3x(A) : TIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVCGLSART-iYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHA 
         :                                                                                                                          
 1q3x(B) : ****CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVC---gFWTSSKGEKSLPVCEPVCGLSARTTiYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHA 
           ___________________________________________________________________431__________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1q3x(A) : VYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK 
         :                                                                                                                          
 1q3x(B) : VYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEK 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________                                       
 1q3x(A) : PPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF                                       
         :                                                                                                                          
 1q3x(B) : PPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISDF                                       
           __________________________________________________________________________________                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.2
Translation
(A)
0.4
Closure
(%)
54.2
Bending Residues
( green )
  431 - 432
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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