4M5.3 Anti-Fluorescein Single Chain Antibody Fragment

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4M5.3 Anti-Fluorescein Single Chain Antibody Fragment
  Conformer 1
(PDB)
1x9q (A)
  Conformer 2
(PDB)
2mpa (L)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 49 8.32   155 - 157   171 - 216   248 - 250
2 103 0.6   19 - 121
3 32 6.41   170 - 170   217 - 247

Sequence


           _________________________________________________________________________________________________________121____________ 
 1x9q(A) : SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLE---kDGG-- 
         :                                                                                                                          
 2mpa(L) : *DIVMTQTPLSLPVSLGDKASISCRSSQALVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVFFCSQSTHVPRTFGGGTKLEIKRADAAPT 
           _________________________________________________________________________________________________________107____________ 

           _156______________________________________________________216_______________________________247_____________________     
 1x9q(A) : VKLDETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASYGMEYLGQGTSVTVS     
         :                                                                                                                          
 2mpa(L) : VSIFPPSSEQLTSGGA-SVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTY---SMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC************     
           _123______________________________________________________179_______________________________210_____________________     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
48.1
Translation
(A)
-31.4
Closure
(%)
99.7
Bending Residues
( green )
  121 - 155
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
142.0
Translation
(A)
9.2
Closure
(%)
81.8
Bending Residues
( green )
  156 - 171
  216 - 219
  247 - 250
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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