M32 Carboxypeptidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name M32 Carboxypeptidase
  Conformer 1
(PDB) 		1ka2 (A)
  Conformer 2
(PDB) 		1k9x (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 435 0.48   5 - 98   141 - 152   157 - 369   371 - 407   419 - 497
2 32 0.43   99 - 130
3 26 0.38   131 - 140   153 - 156   370 - 370   408 - 418

Sequence


           ____________________________________________________________________________________________96__________________________ 
 1ka2(A) : EVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEA 
         :                                                                                                                          
 1k9x(B) : EVFQNETIKQILAKYRRIWAIGHAQSVLGWDLEVNMPKEGILERSVAQGELSVLSHELLLHPEFVNLVEKAKGLENLNEYERGIVRVLDRSIRIARAFPPEFIREVSETTSLATKAWEEA 
           ____________________________________________________________________________________________96__________________________ 

           _____130_______140_________152_156______________________________________________________________________________________ 
 1ka2(A) : KAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPFTT 
         :                                                                                                                          
 1k9x(B) : KAKDDFSKFEPWLDKIISLAKRAAEYLGYEEEPYDALLDLYEEGLRTRDVEKMFEVLEKKLKPLLDKILEEGKVPREHPLEKEKYEREWMERVNLWILQKFGFPLGTRARLDVSAHPFTT 
           _____130_______140_________152_156______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ka2(A) : EFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFH 
         :                                                                                                                          
 1k9x(B) : EFGIRDVRITTRYEGYDFRRTILSTVHEFGHALYELQQDERFMFTPIAGGVSLGIHESQSRFWENIIGRSKEFVELIYPVLKENLPFMSNYTPEDVYLYFNIVRPDFIRTEADVVTYNFH 
           ________________________________________________________________________________________________________________________ 

           ____369___________________________________407________418________________________________________________________________ 
 1ka2(A) : ILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKAIG 
         :                                                                                                                          
 1k9x(B) : ILLRFKLERLMVSEEIKAKDLPEMWNDEMERLLGIRPRKYSEGILQDIHWAHGSIGYFPTYTIGTLLSAQLYYHIKKDIPDFEEKVAKAEFDPIKAWLREKIHRWGSIYPPKELLKKAIG 
           ____369___________________________________407________418________________________________________________________________ 

           _________________                                                                                                        
 1ka2(A) : EDMDAEYFVRWVKEKYL                                                                                                        
         :                                                                                                                          
 1k9x(B) : EDMDAEYFVRWVKEKYL                                                                                                        
           _________________                                                                                                        

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 8.9 0.4 92.5   96 - 99 Bending Region Analysis
1 3 4.3 0.0 99.1   140 - 141   152 - 153   156 - 157   369 - 371   407 - 408   418 - 419 Bending Region Analysis
3 2 5.5 0.1 41.7   130 - 131 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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