3-Octaprenyl-4-Hydroxybenzoate Carboxy-Lyase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Octaprenyl-4-Hydroxybenzoate Carboxy-Lyase
  Conformer 1
(PDB)
2idb (A)
  Conformer 2
(PDB)
2idb (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 126 0.42   338 - 468
2 292 0.77   9 - 337
3 21 0.43   469 - 489

Sequence


           ________________________________________________________________________________________________________________________ 
 2idb(A) : YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSpVLCNLFGTPKRVAggQEDVSALREVGKLLAFLKEPEPPKGFRDLpTKRLRGAPCQQKIVSGDDVD 
         :                                                                                                                          
 2idb(B) : *NDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSpVLCNLFGTPKRVAggQEDVSALREVGKLLA--------------pTKRLRGAPCQQKIVSGDDVD 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2idb(A) : LNRIPItCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIrWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDL 
         :                                                                                                                          
 2idb(B) : LNRIPItCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIrWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPV-----eYAFAGLLRGTKTEVVKCISNDL 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________337______________________________________________ 
 2idb(A) : EVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVgV 
         :                                                                                                                          
 2idb(B) : EVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVgV 
           _______________________________________________________________________337______________________________________________ 

           _____________________________________________________________________________468________________________                 
 2idb(A) : WSFLRQFyTKFVIVCDDDVNARDWNDVIWAITTRdPARDTVLVENTPIDYLDFASPVSGLGSKgLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF*                 
         :                                                                                                                          
 2idb(B) : WSFLRQFyTKFVIVCDDDVNARDWNDVIWAITTRdPARDTVLVENTPIDYLDFASPVSGLGSKgLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFN                 
           _____________________________________________________________________________468________________________                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.4
Translation
(A)
0.4
Closure
(%)
97.6
Bending Residues
( green )
  337 - 338
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
16.8
Translation
(A)
-0.1
Closure
(%)
98.9
Bending Residues
( green )
  468 - 469
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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