50S Ribosomal Protein L9

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 50S Ribosomal Protein L9
  Conformer 1
(PDB) 		2i2t (H)
  Conformer 2
(PDB) 		2awb (H)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 81 3.19   66 - 146
2 62 2.23   4 - 65

Sequence


           _______________________________________________________________65_______________________________________________________ 
 2i2t(H) : MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 
         :                                                                                                                          
 2awb(H) : MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNIEFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADAVTAAGVEVAKSEVRLPNG 
           _______________________________________________________________65_______________________________________________________ 

           _____________________________                                                                                            
 2i2t(H) : VLRTTGEHEVSFQVHSEVFAKVIVNVVAE                                                                                            
         :                                                                                                                          
 2awb(H) : VLRTTGEHEVSFQVHSEVFAKVIVNVVAE                                                                                            
           _____________________________                                                                                            

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		30.5
Translation
(A) 		2.3
Closure
(%) 		23.0
Bending Residues
( green ) 		  65 - 66
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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