DynDom - Protein Domain Motions

Bifunctional Protein Puta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Bifunctional Protein Puta
Conformer 1 (PDB)	7my9 (A)
Conformer 2 (PDB)	7my9 (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	687	0.38	16 - 153 158 - 538 549 - 561 563 - 567 572 - 576 594 - 595 597 - 597 601 - 603 641 - 642 646 - 647 655 - 657 659 - 659 665 - 668 673 - 675 745 - 745 814 - 835 842 - 844 852 - 856 869 - 886 913 - 916 918 - 918 923 - 925 939 - 941 952 - 958 961 - 993 996 - 1000 1005 - 1009 1083 - 1085 1087 - 1087 1090 - 1090 1217 - 1218 1221 - 1231
2	525	0.42	154 - 157 539 - 548 562 - 562 568 - 571 577 - 593 596 - 596 598 - 600 604 - 640 643 - 645 648 - 654 658 - 658 660 - 664 669 - 672 676 - 744 746 - 813 836 - 841 845 - 851 857 - 868 887 - 912 917 - 917 919 - 922 926 - 938 942 - 951 959 - 960 994 - 995 1001 - 1004 1010 - 1082 1086 - 1086 1088 - 1089 1091 - 1216 1219 - 1220

Sequence

`________________________________________________________________________________________________________________________` `7my9(A) : APAPFADFAPPVRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHSGSGVEGLVQEYSLSSQEGVALMCLAEALLRIPDTATRDALIRDKIADGNWKSH` `:` `7my9(B) : APAPFADFAPPVRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKHSGSGVEGLVQEYSLSSQEGVALMCLAEALLRIPDTATRDALIRDKIADGNWKSH` `________________________________________________________________________________________________________________________` `_____________153_157____________________________________________________________________________________________________` `7my9(A) : rSLFVNAATWGLVVTGKLTSTVNDRSLAAALTRLISRCGEPVIRRGVDMAMRMMGEQFVTGETIREALKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIY` `:` `7my9(B) : rSLFVNAATWGLVVTGKLTSTVNDRSLAAALTRLISRCGEPVIRRGVDMAMRMMGEQFVTGETIREALKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIY` `_____________153_157____________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `7my9(A) : EGPGISIKLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLCLDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAE` `:` `7my9(B) : EGPGISIKLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLCLDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAE` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `7my9(A) : IKRAQLDGLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKYEFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANS` `:` `7my9(B) : IKRAQLDGLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKYEFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANS` `________________________________________________________________________________________________________________________` `______________________________________538_______548__________561___567_571___________________593____600_________________` `7my9(A) : SFVHRINDPKVSIDELIADPVEVVRAMPVVGAKHDRIALPAELFGDARTNSAGLDLSNEETLASLTEALRESAAMKWTALPQLATGPAAGETRTVLNPGDHRDVVGSVTETSEEDARRAV` `:` `7my9(B) : SFVHRINDPKVSIDELIADPVEVVRAMPVVGAKHDRIALPAELFGDARTNSAGLDLSNEETLASLTEALRESAAMKWTALPQLATGPAAGETRTVLNPGDHRDVVGSVTETSEEDARRAV` `______________________________________538_______548__________561___567_571___________________593____600_________________` `____________________640__645______654_______664_668_672_________________________________________________________________` `7my9(A) : RLAADAAPDWAAVPPSERAACLDRAAELMQARMPTLLGLIIREAGKSALNAIAEVREAIDFLRYYAEQTRRTLGPGHGPLGPIVCISPWNFPLAIFTGQIAAALVAGNPVLAKPAEETPL` `:` `7my9(B) : RLAADAAPDWAAVPPSERAACLDRAAELMQARMPTLLGLIIREAGKSALNAIAEVREAIDFLRYYAEQTRRTLGPGHGPLGPIVCISPWNFPLAIFTGQIAAALVAGNPVLAKPAEETPL` `____________________640__645______654_______664_668_672_________________________________________________________________` `____744__________________________________________________________________813___________________835___841_______851__856_` `7my9(A) : IAAEGVRILREAGIPASALQLLPGDGRVGAALVAAAETAGVMFTGSTEVARLIQAQLADRLSPAGRPIPLIAETGGQNAMIVDSSALAEQVVGDVITSAFDSAGQRCSALRVLCLQEDVA` `:` `7my9(B) : IAAEGVRILREAGIPASALQLLPGDGRVGAALVAAAETAGVMFTGSTEVARLIQAQLADRLSPAGRPIPLIAETGGQNAMIVDSSALAEQVVGDVITSAFDSAGQRCSALRVLCLQEDVA` `____744__________________________________________________________________813___________________835___841_______851__856_` `________868_______________886__________________907____________922_____________938__________951____958___________________` `7my9(A) : DRILTMLKGALHELHIGRTDRLSVDVGPVITSEAKDNIEKHIERMRGLGRKVEQIGLASETGVGTFVPPTIIELEKLSDLQREVFGPVLHVIRYRRDDLDRLVDDVNATGYGLTFGLHTR` `:` `7my9(B) : DRILTMLKGALHELHIGRTDRLSVDVGPVITSEAKDNIEKHIERMRGLGRKVEQIGLASETGVGTFVPPTIIELEKLSDLQREVFGPVLHVIRYRRDDLDRLVDDVNATGYGLTFGLHTR` `________868_______________886__________________907____________922_____________938__________951____958___________________` `_____________993___1000_____1009_____________________________________________________________________1082_______________` `7my9(A) : LDETIAHVTSRIKAGNLYINRNIIGAVVGVQPFGGRGLSGTGPKAGGPLYLGRLVTTAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEAEAARNAGSSSALGLDLELPGPVGERNLYTLH` `:` `7my9(B) : LDETIAHVTSRIKAGNLYINRNIIGAVVGVQPFGGRGLSGTGPKAGGPLYLGRLVTTAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEAEAARNAGSSSALGLDLELPGPVGERNLYTLH` `_____________993___1000_____1009_____________________________________________________________________1082_______________` `___________________________________________________________________________________________________________________1216_` `7my9(A) : ARGRILLVPATESGLYHQLAAALATGNSVAIDAASGLQASLKNLPQTVGLRVSWSKDWAADGPFAGALVEGDAERIRAVNKAIAALPGPLLLVQAASSGEIARNPDAYCLNWLVEEVSAS` `:` `7my9(B) : ARGRILLVPATESGLYHQLAAALATGNSVAIDAASGLQASLKNLPQTVGLRVSWSKDWAADGPFAGALVEGDAERIRAVNKAIAALPGPLLLVQAASSGEIARNPDAYCLNWLVEEVSAS` `___________________________________________________________________________________________________________________1216_` `________________` `7my9(A) : INTAAAGGNASLMAIG` `:` `7my9(B) : INTAAAGGNASLMAIG` `________________`

Morph

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	2.9
Translation (A)	0.1
Closure (%)	61.3
Bending Residues ( green )	153 - 154 157 - 159 538 - 539 548 - 549 561 - 563 567 - 568 571 - 577 593 - 598 600 - 601 603 - 604 640 - 643 645 - 648 654 - 655 657 - 660 664 - 665 668 - 669 672 - 673 675 - 676 744 - 746 813 - 814 835 - 836 841 - 842 844 - 845 851 - 852 856 - 857 868 - 869 886 - 887 907 - 919 922 - 923 925 - 931 938 - 942 951 - 952 958 - 961 993 - 996 1000 - 1001 1004 - 1005 1009 - 1010 1082 - 1083 1085 - 1091 1216 - 1221
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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