DynDom - Protein Domain Motions

Bifunctional Protein Puta

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Bifunctional Protein Puta
Conformer 1 (PDB)	6x9c (A)
Conformer 2 (PDB)	6x9c (B)
Window Length	7
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	625	0.48	19 - 20 123 - 129 156 - 173 537 - 548 561 - 570 577 - 591 593 - 593 596 - 596 599 - 600 605 - 652 658 - 820 837 - 853 858 - 868 885 - 920 926 - 950 957 - 984 995 - 1223
2	577	0.38	18 - 18 21 - 122 130 - 155 174 - 536 549 - 560 571 - 576 592 - 592 594 - 595 597 - 598 601 - 604 653 - 657 821 - 836 854 - 857 869 - 884 921 - 925 951 - 956 985 - 994 1224 - 1226

Sequence

`__18_________________________________________________________________________________________________121___127__________` `6x9c(A) : PAPFADFAPPVRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKsGVEGLVQEYSLSSQEGVALMCLAEALLRIPDTATRDALIRDKIADGNWKSHLrSL` `:` `6x9c(B) : PAPFADFAPPVRPQSTLRRAITAAYRRPETECLPPLVEAATQSKEIRDAAASTARKLIEALRGKsGVEGLVQEYSLSSQEGVALMCLAEALLRIPDTATRDALIRDKIADGNWKSHLrSL` `__18_________________________________________________________________________________________________121___127__________` `____________155_______________173_______________________________________________________________________________________` `6x9c(A) : FVNAATWGLVVTGKLTSTVNDRSLAAALTRLISRCGEPVIRRGVDMAMRMMGEQFVTGETIREALKRSKELEEKGFSYSYDMLGEAATTAADAERYYRDYESAIHAIGKASAGRGIYEGP` `:` `6x9c(B) : FVNAATWGLVVTGKLTSTVNDRSLAAALTRLISRCGEPVIRRGVDMAMRMMGEQFVTGETIREALKRSKELEEKGFSYSYDML-eAATTAADAERYYRDYESAIHAIGKASAGRGIYEGP` `____________155_______________173_______________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6x9c(A) : GISIKLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLCLDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKR` `:` `6x9c(B) : GISIKLSALHPRYSRAQAARVMGELLPRVKALALLAKNYDIGLNIDAEEADRLELSLDLLEVLCLDGDLSGWNGMGFVVQAYGKRCPFVLDFIIDLARRSGRRIMVRLVKGAYWDAEIKR` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `6x9c(A) : AQLDGLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKYEFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFV` `:` `6x9c(B) : AQLDGLADFPVFTRKIHTDVSYIACAAKLLAATDVVFPQFATHNAQTLAAIYHMAGKDFHVGKYEFQCLHGMGEPLYEEVVGRGKLDRPCRIYAPVGTHETLLAYLVRRLLENGANSSFV` `________________________________________________________________________________________________________________________` `_________________________________536_________548_________560_______570__________________591__________604________________` `6x9c(A) : HRINDPKVSIDELIADPVEVVRAMPVVGAKHDRIALPAELFGDARTNSAGLDLSNEETLASLTEALRESAAMKWTALPQLATGPAAGETRTVLNPGDHRDVVGSVTETSEEDARRAVRLA` `:` `6x9c(B) : HRINDPKVSIDELIADPVEVVRAMPVVGAKHDRIALPAELFGDARTNSAGLDLSNEETLASLTEALRESAAMKWTALPQLATGPAAGETRTVLNPGDHRDVVGSVTETSEEDARRAVRLA` `_________________________________536_________548_________560_______570__________________591__________604________________` `_____________________________652__657___________________________________________________________________________________` `6x9c(A) : ADAAPDWAAVPPSERAACLDRAAELMQARMPTLLGLIIREAGKSALNAIAEVREAIDFLRYYAEQTRRTLGPGHGPLGPIVCISPWNFPLAIFTGQIAAALVAGNPVLAKPAEETPLIAA` `:` `6x9c(B) : ADAAPDWAAVPPSERAACLDRAAELMQARMPTLLGLIIREAGKSALNAIAEVREAIDFLRYYAEQTRRTLGPGHGPLGPIVCISPWNFPLAIFTGQIAAALVAGNPVLAKPAEETPLIAA` `_____________________________652__657___________________________________________________________________________________` `_____________________________________________________________________________820_____________836______________853_______` `6x9c(A) : EGVRILREAGIPASALQLLPGDGRVGAALVAAAETAGVMFTGSTEVARLIQAQLADRLSPAGRPIPLIAETGGQNAMIVDSSALAEQVVGDVITSAFDSAGQRCSALRVLCLQEDVADRI` `:` `6x9c(B) : EGVRILREAGIPASALQLLPGDGRVGAALVAAAETAGVMFTGSTEVARLIQAQLADRLSPAGRPIPLIAETGGQNAMIVDSSALAEQVVGDVITSAFDSAGQRCSALRVLCLQEDVADRI` `_____________________________________________________________________________820_____________836______________853_______` `_____868_____________884_________________________________920_924_______________________950___956________________________` `6x9c(A) : LTMLKGALHELHIGRTDRLSVDVGPVITSEAKDNIEKHIERMRGLGRKVEQIGLASETGVGTFVPPTIIELEKLSDLQREVFGPVLHVIRYRRDDLDRLVDDVNATGYGLTFGLHTRLDE` `:` `6x9c(B) : LTMLKGALHELHIGRTDRLSVDVGPVITSEAKDNIEKHIERMRGLGRKVEQIGLASETGVGTFVPPTIIELEKLSDLQREVFGPVLHVIRYRRDDLDRLVDDVNATGYGLTFGLHTRLDE` `_____868_____________884_________________________________920_924_______________________950___956________________________` `_984_______994__________________________________________________________________________________________________________` `6x9c(A) : TIAHVTSRIKAGNLYINRNIIGAVVGVQPFGGRGLSGTGPKAGGPLYLGRLVTTAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEAEAARNAGSSSALGLDLELPGPVGERNLYTLHARG` `:` `6x9c(B) : TIAHVTSRIKAGNLYINRNIIGAVVGVQPFGGRGLSGTGPKAGGPLYLGRLVTTAPVPPQHSSVHTDPVLLDFAKWLDGKGARAEAEAARNAGSSSALGLDLELPGPVGERNLYTLHARG` `_984_______994__________________________________________________________________________________________________________` `______________________________________________________________________________________________________________________12` `6x9c(A) : RILLVPATESGLYHQLAAALATGNSVAIDAASGLQASLKNLPQTVGLRVSWSKDWAADGPFAGALVEGDAERIRAVNKAIAALPGPLLLVQAASSGEIARNPDAYCLNWLVEEVSASINT` `:` `6x9c(B) : RILLVPATESGLYHQLAAALATGNSVAIDAASGLQASLKNLPQTVGLRVSWSKDWAADGPFAGALVEGDAERIRAVNKAIAALPGPLLLVQAASSGEIARNPDAYCLNWLVEEVSASINT` `______________________________________________________________________________________________________________________12` `22_______` `6x9c(A) : AAAGGNASL` `:` `6x9c(B) : AAAGGNASL` `22_______`

Morph

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Status: Initialising

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	3.1
Translation (A)	0.1
Closure (%)	72.7
Bending Residues ( green )	18 - 21 121 - 123 127 - 132 155 - 156 173 - 174 536 - 537 548 - 549 560 - 561 570 - 577 591 - 601 604 - 605 652 - 653 657 - 658 820 - 821 836 - 837 853 - 858 868 - 869 884 - 885 920 - 921 924 - 929 950 - 951 956 - 957 984 - 985 994 - 995 1222 - 1224
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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