Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB) 		6g1m (A)
  Conformer 2
(PDB) 		6g1m (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 254 0.68   3 - 161   197 - 221   248 - 264   278 - 333
2 73 0.86   162 - 196   222 - 247   265 - 277

Sequence


           ________________________________________________________________________________________________________________________ 
 6g1m(A) : SYKVGIWGFGAMGSGIAKNILSKKNLKLVGVHDFREEYIEKDVGELLGLGKIGIKVYPDPITMVKQTDPDLVVIATNSFISVVKDQIISILKENKNVITIAEEMAFPFSKDPKAANEIDT 
         :                                                                                                                          
 6g1m(B) : SYKVGIWGFGAMGSGIAKNILSKKNLKLVGVHDFREEYIEKDVGELLGLg---IKVYPDPITMVKQTDPDLVVIATNSFISVVKDQIISILKENKNVITIAEEMAFPFSKDPKAANEIDT 
           ________________________________________________________________________________________________________________________ 

           ______________________________________161____________________________192__________________________221___________________ 
 6g1m(A) : VAKDHNVSVLGTGVNPGFVLDTLIITLTGICLNVQRIKAARINDLSPFGPTVMETQGVGTTPEEFKQGIKSGKI-gHIGFEQSIHMIAKALGWEIDRIEQKREPIISNVMRETKYVKVQP 
         :                                                                                                                          
 6g1m(B) : VAKDHNVSVLGTGVNPGFVLDTLIITLTGICLNVQRIKAARINDLSPFGPTVMETQGVGTTPEEFKQGIKSGKIVGHIGFEQSIHMIAKALGWEIDRIEQKREPIISNVMRETKYVKVQP 
           ______________________________________161____________________________192__________________________221___________________ 

           ____247______________264__________277__________________________________________________________                          
 6g1m(A) : GMVAGCNHTAKAFYKNELLIELEHPQQVLPHLENVQTGDYITIQGDPDISMGINPEIPGGKGTIAIATNMIPSVVEARPGLLTMVDLPIPRALLA                          
         :                                                                                                                          
 6g1m(B) : GMVAGCNHTAKAFYKNELLIELEHPQQVLPHLENVQTGDYITIQGDPDISMGINPEIPGGKGTIAIATNMIPSVVEARPGLLTMVDLPIPRALLA                          
           ____247______________264__________277__________________________________________________________                          

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		28.5
Translation
(A) 		0.4
Closure
(%) 		90.9
Bending Residues
( green ) 		  161 - 162
  192 - 198
  221 - 222
  247 - 249
  264 - 266
  277 - 279
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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