Nuclear Factor Nf-Kappa-B P105 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Nuclear Factor Nf-Kappa-B P105 Subunit
  Conformer 1
(PDB) 		1ooa (A)
  Conformer 2
(PDB) 		1ooa (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 161 1.71   40 - 148   177 - 183   204 - 248
2 48 0.7   149 - 176   184 - 203
3 100 0.2   249 - 348

Sequence


           ____________________________________________________________________________________________________________148_________ 
 1ooa(A) : GGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTE 
         :                                                                                                                          
 1ooa(B) : GGPYLQILEQPKQRGFRFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKNIHLHAHSLVGKHCEDGVCTVTAGPKDMVVGFANLGILHVTKKKVFETLEARMTE 
           ____________________________________________________________________________________________________________148_________ 

           _______________175__180____________________203_____________________________________243__________________________________ 
 1ooa(A) : ACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD 
         :                                                                                                                          
 1ooa(B) : ACIRGYNPGLLVHSDLAYLQAEGGGDRQLTDREKEIIRQAAVQQTKEMDLSVVRLMFTAFLPDSTGSFTRRLEPVVSDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD 
           _______________175__180____________________203_____________________________________243__________________________________ 

           _________________________________________________________________________                                                
 1ooa(A) : IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE                                                
         :                                                                                                                          
 1ooa(B) : IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE                                                
           _________________________________________________________________________                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.5
Translation
(A) 		0.0
Closure
(%) 		82.9
Bending Residues
( green ) 		  148 - 149
  175 - 177
  180 - 185
  203 - 205
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		12.1
Translation
(A) 		-5.9
Closure
(%) 		80.4
Bending Residues
( green ) 		  243 - 249
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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