D-Mandelate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-107   ASN-108  2.1 2.2 11.0 -19.8 124.0 127.3 15.2
 ASN-108   SER-109  2.7 2.7 -4.1 -1.0 31.5 29.1 14.3
 SER-109   ARG-110  2.1 2.4 -2.6 -1.5 81.6 82.9 7.8
 ARG-110   GLY-111  4.8 5.0 -2.2 4.0 42.7 41.2 -10.3
 GLY-111   ALA-112  6.7 6.7 3.3 -18.7 155.5 153.1 101.5
 ALA-112   GLY-113  4.5 4.8 17.7 -6.4 129.3 122.9 -43.0
 GLY-113   ASP-114  7.8 8.2 -27.6 3.6 92.9 84.8 8.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-313   HIS-314  5.2 5.4 -5.2 5.3 96.5 95.5 23.4
 HIS-314   GLU-315  2.5 2.6 -2.4 -5.2 35.3 33.3 73.4
 GLU-315   PHE-316  0.1 0.4 5.9 -7.3 146.8 146.4 -43.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees