Threonyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-403   ALA-404  4.6 3.6 0.8 6.4 116.8 124.8 -43.1
 ALA-404   LEU-405  3.2 3.4 -9.5 -4.6 8.0 11.3 133.0
 LEU-405   ALA-406  4.8 4.5 9.0 -1.5 120.2 108.3 -24.5
 ALA-406   VAL-407  3.6 3.5 -19.5 3.8 85.2 76.8 21.3
 VAL-407   TYR-408  0.6 1.2 5.6 -7.8 133.3 137.8 22.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-409   HIS-410  1.6 0.9 15.7 -0.2 103.9 111.4 -66.3
 HIS-410   PHE-411  2.4 3.1 9.6 -10.3 112.5 122.7 8.8
 PHE-411   GLY-412  4.0 4.2 -21.1 1.0 38.7 40.6 108.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-467   TYR-468  12.8 13.0 -8.1 10.5 154.7 159.2 2.4
 TYR-468   HIS-469  10.6 10.9 -4.5 20.0 125.4 114.6 111.2
 HIS-469   LEU-470  12.4 13.2 -8.4 16.2 154.1 152.5 36.5
 LEU-470   LYS-471  10.9 12.3 15.2 -22.6 50.0 69.0 41.4
 LYS-471   ASP-472  12.4 15.0 7.2 5.8 63.2 63.5 65.8
 ASP-472   ALA-473  11.8 16.7 7.3 -2.4 10.6 19.6 -11.4
 ALA-473   ILE-474  11.6 18.1 -0.7 8.0 115.9 100.6 1.0
 ILE-474   GLY-475  15.3 21.1 -9.1 -19.0 60.3 70.3 96.4
 GLY-475   ARG-476  15.6 19.1 26.1 9.4 151.1 156.0 -303.8
 ARG-476   THR-477  17.1 20.3 -8.8 18.6 39.7 56.0 38.7
 THR-477   TRP-478  16.0 18.2 -3.9 0.0 36.4 38.7 35.7
 TRP-478   GLN-479  14.5 16.3 -13.3 11.9 49.6 60.6 -92.7
 GLN-479   LEU-480  13.2 14.3 1.3 -7.3 105.3 96.8 28.3
 LEU-480   GLY-481  9.9 10.9 -44.6 40.5 34.6 50.0 18.7
 GLY-481   THR-482  8.0 8.0 0.1 -12.3 133.0 125.3 44.9
 THR-482   MET-483  9.2 9.2 7.8 -0.9 126.4 131.9 -47.2
 MET-483   GLN-484  8.5 8.7 29.2 -19.8 133.9 130.4 28.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees