Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 HIS-382   PHE-383  8.4 8.1 0.9 1.6 107.7 108.0 -3.1
 PHE-383   LEU-384  10.7 10.5 0.7 -2.1 177.0 177.2 2.6
 LEU-384   SER-385  11.3 11.0 -1.5 8.3 63.0 63.6 -8.3
 SER-385   GLY-386  7.7 7.3 -10.0 7.3 89.3 87.1 2.6
 GLY-386   PHE-387  7.0 6.9 9.0 -10.1 102.5 101.8 19.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-403   THR-404  4.6 3.6 19.7 19.6 57.6 64.0 74.8
 THR-404   PHE-405  3.5 4.0 -30.0 4.9 58.5 61.5 27.6
 PHE-405   SER-406  4.3 4.2 13.7 -20.6 73.7 70.8 3.1
 SER-406   ALA-407  7.9 8.0 2.3 0.7 121.8 125.8 -1.9
 ALA-407   CYS-408  10.3 10.4 2.2 6.1 128.2 127.3 -0.6
 CYS-408   PHE-409  12.3 12.4 2.2 -10.3 107.5 109.0 -2.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees