Tryptophan Synthase Alpha Chain

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-232   SER-233  8.4 7.8 18.9 -2.7 82.7 72.5 0.8
 SER-233   GLY-234  5.2 4.8 -7.9 -38.6 118.1 105.7 -58.8
 GLY-234   SER-235  1.9 1.5 123.5 115.5 39.6 62.9 -190.1
 SER-235   ALA-236  0.7 2.3 -179.1 11.8 111.9 165.9 465.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-253   ALA-254  5.0 3.6 2.1 -2.9 47.9 53.1 1.6
 ALA-254   LEU-255  2.1 1.0 15.6 -4.0 29.5 30.6 25.3
 LEU-255   LYS-256  4.3 3.2 -3.6 -4.9 87.9 81.8 8.5
 LYS-256   VAL-257  7.4 6.3 -2.7 -6.6 96.5 88.2 2.4
 VAL-257   PHE-258  6.7 5.8 1.6 20.4 17.8 26.7 54.3
 PHE-258   VAL-259  6.2 5.5 -6.4 8.2 123.4 119.4 -7.4
 VAL-259   GLN-260  8.1 7.7 3.8 -2.6 100.9 104.7 -3.7
 GLN-260   PRO-261  11.3 10.8 -5.0 3.7 118.2 114.0 1.4
 PRO-261   MET-262  12.2 11.8 -8.5 8.0 169.1 169.9 -2.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees