Cyclin-Dependent Kinase 7

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-153   ALA-154  7.4 7.8 -7.4 5.7 59.4 57.6 9.3
 ALA-154   ASP-155  5.2 5.5 6.1 22.7 61.6 71.0 17.2
 ASP-155   PHE-156  3.3 3.5 -148.2 153.2 94.2 80.6 -14.7
 PHE-156   GLY-157  0.7 0.4 -17.4 125.9 92.4 108.8 21.7
 GLY-157   LEU-158  4.4 3.6 55.3 41.6 62.2 142.2 -62.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-176   TRP-177  2.3 2.2 10.6 -3.9 106.2 115.0 0.8
 TRP-177   TYR-178  1.6 1.4 -1.9 3.0 124.9 120.5 -0.3
 TYR-178   ARG-179  3.6 3.5 8.1 -5.6 80.8 81.1 -0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees