Glutamate Receptor Ionotropic, Delta-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-106   VAL-107  8.7 8.2 -23.9 -15.7 65.0 85.3 85.5
 VAL-107   GLY-108  11.6 11.3 4.3 -14.2 144.0 154.9 52.2
 GLY-108   ILE-109  12.9 12.8 -0.3 -21.0 66.6 77.1 119.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-211   VAL-212  12.9 13.7 -15.0 -27.7 8.6 7.7 277.4
 VAL-212   ILE-213  12.2 12.7 16.7 -35.1 102.3 105.3 53.4
 ILE-213   GLY-214  14.5 13.7 51.1 -72.0 153.4 168.8 114.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees