DNA Polymerase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-188   THR-189  5.7 6.2 -3.3 8.1 124.0 128.7 70.1
 THR-189   ALA-190  7.3 7.8 1.4 4.3 22.6 26.0 90.7
 ALA-190   GLY-191  6.5 6.8 -2.3 -0.1 123.2 123.7 11.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-364   ASP-365  5.4 5.3 -7.8 2.1 53.9 56.0 40.6
 ASP-365   LYS-366  3.4 3.3 4.5 -7.3 54.3 55.9 -70.1
 LYS-366   TRP-367  3.2 3.3 5.6 3.5 62.2 60.6 93.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-382   LYS-383  3.8 3.8 7.3 -1.2 80.2 77.5 42.4
 LYS-383   LEU-384  6.9 6.8 -11.3 9.4 46.3 45.8 29.2
 LEU-384   MET-385  6.7 6.8 5.3 -6.2 78.8 82.9 -25.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-389   TYR-390  10.6 10.3 0.2 2.9 95.5 94.1 64.3
 TYR-390   GLY-391  14.0 13.7 2.8 0.7 29.4 30.0 50.9
 GLY-391   LYS-392  15.1 14.6 -17.3 13.0 121.6 118.4 -80.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-419   GLU-420  27.2 26.5 -19.1 38.2 99.8 105.4 124.8
 GLU-420   THR-421  24.6 24.1 30.4 -11.2 6.1 1.2 345.9
 THR-421   LYS-422  24.3 23.7 -3.0 1.3 105.3 104.2 -27.4
 LYS-422   ASP-423  21.8 21.1 -71.9 58.8 147.2 143.7 -184.0
 ASP-423   PRO-424  22.1 22.3 4.8 -3.9 36.7 34.8 31.9
 PRO-424   VAL-425  21.8 21.4 11.2 -3.5 58.1 66.1 310.1
 VAL-425   TYR-426  19.4 19.2 16.5 -9.9 40.9 43.8 -29.8
 TYR-426   THR-427  21.4 21.3 -5.0 5.9 110.5 110.1 -15.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-558   VAL-559  25.2 25.1 -20.1 23.0 130.9 136.9 48.7
 VAL-559   GLN-560  26.3 26.2 7.3 2.2 40.3 39.3 175.7
 GLN-560   VAL-561  24.1 24.1 1.0 7.2 33.0 35.4 145.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-562   GLY-563  22.8 22.9 -25.6 10.3 108.8 100.4 -207.0
 GLY-563   GLY-564  20.0 19.6 10.8 26.9 25.9 18.5 645.4
 GLY-564   VAL-565  19.8 19.7 -4.1 -26.4 131.0 129.2 -365.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees