Polymerase (Dna Directed) Kappa

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  SER-404   THR-405  24.7 24.7 -8.3 15.5 24.1 23.5 -11.5  THR-405   HIS-406  23.7 23.7 8.9 -4.6 87.1 85.4 1.0  HIS-406   LEU-407  20.4 20.2 -1.8 35.5 136.1 134.6 36.4  LYS-414   SER-415  7.2 8.8 37.1 -39.4 143.9 120.4 14.4  SER-415   MET-416  7.8 8.5 9.5 26.5 118.9 140.8 -31.3 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees