Pyruvate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-113   LYS-114  10.8 10.5 6.8 7.3 117.2 113.4 -24.4
 LYS-114   GLY-115  8.4 7.7 -10.3 -10.8 81.5 77.5 21.6
 GLY-115   PRO-116  5.1 4.9 25.7 -12.6 87.5 97.1 12.8
 PRO-116   GLU-117  1.4 1.2 -72.1 21.0 41.6 39.2 95.3
 GLU-117   ILE-118  3.4 3.2 -2.8 30.8 99.4 107.5 17.2
 ILE-118   ARG-119  6.2 6.2 19.2 -12.9 110.7 107.8 3.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-208   ASN-209  7.6 7.8 -17.2 16.4 100.0 100.7 30.4
 ASN-209   LEU-210  5.4 5.4 1.8 -18.9 77.3 76.7 -21.2
 LEU-210   PRO-211  7.6 7.2 -36.5 27.2 127.5 113.5 -14.4
 PRO-211   GLY-212  7.5 6.4 -8.7 16.0 86.8 90.3 -11.8
 GLY-212   ALA-213  10.0 9.5 11.0 -25.5 151.5 148.5 39.7
 ALA-213   ALA-214  10.5 9.8 0.0 4.9 131.1 140.5 -18.3
 ALA-214   VAL-215  11.0 10.2 12.2 -50.3 141.8 131.6 51.2
 VAL-215   ASP-216  8.1 7.1 -35.6 -9.2 32.2 50.4 119.4
 ASP-216   LEU-217  8.8 7.0 111.0 -63.5 122.4 128.3 -115.2
 LEU-217   PRO-218  5.1 3.5 12.7 -27.8 110.7 105.2 2.3
 PRO-218   ALA-219  5.0 3.9 4.6 -1.4 52.3 59.8 7.5
 ALA-219   VAL-220  6.9 5.8 15.2 -17.4 94.2 116.7 3.8
 VAL-220   SER-221  6.0 5.5 -20.9 1.8 57.8 50.4 19.6
 SER-221   GLU-222  3.3 3.0 -6.6 7.7 39.3 40.6 8.9
 GLU-222   LYS-223  4.6 4.3 4.7 -6.4 76.8 69.5 0.4
 LYS-223   ASP-224  7.7 7.0 -4.6 8.4 104.6 113.3 12.5
 ASP-224   ILE-225  8.3 7.6 13.3 -0.7 139.0 136.7 -20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees