Glutamate Receptor Delta-2 Subunit

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-104   TYR-105  2.8 3.3 -1.3 0.6 126.0 122.9 8.8
 TYR-105   SER-106  0.9 0.6 -6.3 -11.2 79.6 74.2 23.5
 SER-106   VAL-107  4.4 4.4 -1.6 1.5 127.8 135.6 3.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-213   GLY-214  12.7 12.2 -47.5 106.7 144.0 142.1 205.4
 ALA-218   ASP-219  3.8 4.3 105.3 -12.4 23.1 43.4 312.0
 ASP-219   ARG-220  3.0 4.1 -4.1 -33.2 89.6 103.5 -12.1
 ARG-220   GLY-221  1.9 1.7 20.7 -0.5 133.6 124.6 -54.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-255   TRP-256  11.1 11.3 4.3 -6.6 73.9 72.7 16.3
 TRP-256   TRP-257  7.4 7.7 6.2 -2.1 92.3 95.3 0.4
 TRP-257   PRO-258  6.2 6.7 6.2 24.0 75.0 74.3 87.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees