T4 Lysozyme

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-2   ILE-3  10.4 11.6 -14.2 -3.0 105.9 101.7 -31.4
 ILE-3   PHE-4  6.8 7.9 16.0 -15.7 35.6 42.7 1.0
 PHE-4   GLU-5  5.9 6.7 3.0 -2.0 32.6 35.8 0.3
 GLU-5   MET-6  8.1 8.5 12.0 -0.2 85.6 96.3 -13.7
 MET-6   LEU-7  7.8 8.0 15.7 -27.4 70.6 70.1 2.0
 LEU-7   ARG-8  4.2 4.5 16.2 -5.6 16.9 18.1 43.6
 ARG-8   ILE-9  4.0 4.6 -0.2 -10.3 128.8 120.7 -40.6
 ILE-9   ASP-10  6.8 7.1 12.7 -13.1 92.1 97.0 16.4
 ASP-10   GLU-11  6.9 6.9 -23.3 8.7 116.2 105.2 -19.0
 GLU-11   GLY-12  4.1 4.4 -11.5 28.2 154.2 155.9 65.5
 GLY-12   LEU-13  2.5 2.5 -20.2 14.5 85.5 80.6 -4.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-70   VAL-71  5.2 5.1 4.8 3.9 59.6 60.0 20.6
 VAL-71   ASP-72  2.4 2.8 5.1 0.4 19.7 17.7 10.1
 ASP-72   ALA-73  4.9 5.1 -10.1 10.3 117.7 117.5 0.9
 ALA-73   ALA-74  5.5 5.3 -5.5 4.4 105.1 101.1 -9.8
 ALA-74   VAL-75  3.1 2.5 1.6 2.3 32.3 31.2 21.1
 VAL-75   ARG-76  0.6 0.6 -0.2 5.2 147.4 140.2 11.3
 ARG-76   GLY-77  3.6 3.3 4.6 -13.7 78.1 77.5 -20.1
 GLY-77   ILE-78  5.5 4.8 3.6 6.9 58.6 64.0 5.5
 ILE-78   LEU-79  4.2 3.7 7.8 -2.2 13.3 5.7 6.4
 LEU-79   ARG-80  2.1 2.0 -1.7 3.9 126.2 126.7 15.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees