Fusion Glycoprotein F0

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fusion Glycoprotein F0
  Conformer 1
(PDB)
3rrt (A)
  Conformer 2
(PDB)
4jhw (F)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 32 3.88   61 - 92
2 30 1.05   31 - 60

Sequence


           ______________________________57________________________________________________________________________________________ 
 3rrt(A) : QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLM************************************************ 
         :                                                                                                                          
 4jhw(F) : QNITEEFYQSTCSAVSKGYLSALRTGWYTSVITIELSNIKENKCNGTDAKVKLIKQELDKYKNAVTELQLLMfLGFLLGVGSAIASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNG 
           ______________________________57________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3rrt(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4jhw(F) : VSVLTSKVLDLKNYIDKQLLPIVNKQSCSISNIETVIEFQQKNNRLLEITREFSVNAGVTTPVSTYMLTNSELLSLINDMPITNDQKKLMSNNVQIVRQQSYSIMSIIKEEVLAYVVQLP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 3rrt(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 4jhw(F) : LYGVIDTPCWKLHTSPLCTTNTKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVQSNRVFCDTMNSLTLPSEVNLCNVDIFNPKYDCKIMTSKTDVSSSVITSLGAIVSCYGKTKCTA 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________________________________________                                
 3rrt(A) : *****************************************************************************************                                
         :                                                                                                                          
 4jhw(F) : SNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKQEGKSLYVKGEPIINFYDPLVFPSDEFDASISQVNEKINQSLAFIRKSDELL                                
           _________________________________________________________________________________________                                

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
45.3
Translation
(A)
0.2
Closure
(%)
17.8
Bending Residues
( green )
  57 - 61
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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