D-Maltodextrin-Binding Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Maltodextrin-Binding Protein 3
  Conformer 1
(PDB) 		1omp  
  Conformer 2
(PDB) 		4mbp  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 23 0.76   169 - 184   335 - 341
2 175 0.43   111 - 168   185 - 260   314 - 327   342 - 368
3 163 0.58   3 - 110   261 - 312   328 - 330

Sequence


           __________________________________________________________________________________________________________109___________ 
 1omp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
         :                                                                                                                          
 4mbp    : KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD 
           __________________________________________________________________________________________________________109___________ 

           _____________________________________________168_____________184________________________________________________________ 
 1omp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
         :                                                                                                                          
 4mbp    : LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV 
           _____________________________________________168_____________184________________________________________________________ 

           ______________257___________________________________________________311______________328__________341___________________ 
 1omp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
         :                                                                                                                          
 4mbp    : NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEA 
           ______________257___________________________________________________311______________328__________341___________________ 

           __________                                                                                                               
 1omp    : LKDAQTRITK                                                                                                               
         :                                                                                                                          
 4mbp    : LKDAQTRITK                                                                                                               
           __________                                                                                                               

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 10.0 0.1 75.2   168 - 169   184 - 185   341 - 342 Bending Region Analysis
1 3 38.7 -0.1 93.8   328 - 335 Bending Region Analysis
3 2 34.3 -0.8 95.5   109 - 113   257 - 262   311 - 317   325 - 330 Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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