Autoinducer 2-Binding Periplasmic Protein Luxp

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autoinducer 2-Binding Periplasmic Protein Luxp
  Conformer 1
(PDB)
2hj9 (A)
  Conformer 2
(PDB)
1zhh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 301 3.09   29 - 70   83 - 101   121 - 131   133 - 142   145 - 363
2 34 2.48   71 - 82   102 - 120   132 - 132   143 - 144

Sequence


           _______________________________________________70__________82________________101________________120________131________14 
 2hj9(A) : *****GYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHR 
         :                                                                                                                          
 1zhh(A) : TQVLNGYWGYQEFLDEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHR 
           _______________________________________________70__________82________________101________________120________131________14 

           2_______________________________________________________________________________________________________________________ 
 2hj9(A) : KFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFI 
         :                                                                                                                          
 1zhh(A) : KFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFI 
           2_______________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________                 
 2hj9(A) : YACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN                 
         :                                                                                                                          
 1zhh(A) : YACSTDVALGAVDALAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN                 
           ________________________________________________________________________________________________________                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.1
Translation
(A)
-0.6
Closure
(%)
99.9
Bending Residues
( green )
  70 - 71
  82 - 83
  101 - 102
  120 - 127
  131 - 133
  142 - 145
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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