Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
3evv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 72 2.78   69 - 144
2 65 0.67   4 - 68

Sequence


           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3evv(A) : SSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITsKGEELFTGVVPILV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5k8q(A) : ************************************************************************************************************************ 
         :                                                                                                                          
 3evv(A) : ELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLvQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGH 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________68_________________________________________________ 
 5k8q(A) : ****DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 3evv(A) : KLEYNqLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM-sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
           ____________________________________________________________________371_________________________________________________ 

           ___________________________                                                                                              
 5k8q(A) : VDEMIREADIDGDGQVNYEEFVQMMTA                                                                                              
         :                                                                                                                          
 3evv(A) : VDEMIREADIDGDGQVNYEEFVQMMT*                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
168.4
Translation
(A)
0.4
Closure
(%)
79.6
Bending Residues
( green )
  68 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download