Divalent Metal Cation Transporter Mnth

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Divalent Metal Cation Transporter Mnth
  Conformer 1
(PDB) 		6bu5 (A)
  Conformer 2
(PDB) 		6c3i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 261 2.09   47 - 60   90 - 167   230 - 232   234 - 261   295 - 299   302 - 434
2 97 1.45   61 - 89   198 - 229   233 - 233   262 - 294   300 - 301
3 23 0.93   175 - 197

Sequence


           ____________________60___________________________89_____________________________________________________________________ 
 6bu5(A) : RILPFLGPAVIASIAYMDPGNFATNIEGGARYGYSLLWVILAANLMAMVIQNLSANLGIASGRNLPELIRERWPRPLVWFYWIQAELVAMATDLAEFLGAALAIQLLTGLPMFWGAVVTG 
         :                                                                                                                          
 6c3i(A) : ******RPAVIASIAYMDPGNFATNIEGGARYGYSLLWVILAANLMAMVIQNLSANLGIASGRNLPELIRERWPRPLVWFYWIQAELVAMATDLAEFLGAALAIQLLTGLPMFWGAVVTG 
           ____________________60___________________________89_____________________________________________________________________ 

           ______167___________________________197________________________224_____232__________________________261_________________ 
 6bu5(A) : VVTFWLLNLQKRGTRPLELAVGAFVLMIGVAYLVQVVLARPDLAAVGAGFVPRLQGPGSAYLAVWIIGATVMPHVIYLHSALTQGRIQTDTTEEKRRLVRLNRVDVIAAMGLAGLINMSM 
         :                                                                                                                          
 6c3i(A) : VVTFWLLNL------pLELAVGAFVLMIGVAYLVQVVLARPDLAAVGAGFVPRLQGPGSAYLAVGIIGATVMPHVIYLHSALTQGRIQTDTTEEKRRLVRLNRVDVIAAMGLAGLINMSM 
           ______167___________________________197________________________224_____232__________________________261_________________ 

           ________289_____________________________________________________________________________________________________________ 
 6bu5(A) : LAVAAATFHGKNVENAGDLTTAYQTLTPLLGPAASVLFAVALLASGLSSSAVGTMAGDVIMQGFMGFHIPLWLRRLITMLPAFIVILLGMDPSSVLILSQVILCFGVPFALVPLLLFTAR 
         :                                                                                                                          
 6c3i(A) : LAVAAATFHGKNVENAGDLTTAYQTLTPLLGPAASVLFAVALLASGLSSSAVGTMAGDVIMQGFMGFHIPLWLRRLITMLPAFIVILLGMDPSSVLILSQVILCFGVPFALVPLLLFTAR 
           ________289_____________________________________________________________________________________________________________ 

           ______________________________________                                                                                   
 6bu5(A) : RDVMGALVTRRSFTVIGWVIAVIIIALNGYLLWELLGG                                                                                   
         :                                                                                                                          
 6c3i(A) : RDVMGALVTRRSFTVIGWVIAVIIIALNGYLLWELLGG                                                                                   
           ______________________________________                                                                                   

Morph

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 20.5 1.0 80.4   60 - 61   89 - 90   224 - 230   232 - 234   261 - 262   289 - 311 Bending Region Analysis
1 3 52.8 -3.6 94.6   167 - 175 Bending Region Analysis
3 2 43.0 -0.7 40.3   197 - 198 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 3 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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