60 Kda Chaperonin 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 60 Kda Chaperonin 2
  Conformer 1
(PDB)
1sjp (A)
  Conformer 2
(PDB)
1sjp (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 258 1.09   136 - 139   150 - 150   152 - 404
2 183 0.83   64 - 135   140 - 149   151 - 151   405 - 512

Sequence


           _________________________________________________________________135_139_______149______________________________________ 
 1sjp(A) : LEDPYEKIGAELVKEVAKKTtTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELT 
         :                                                                                                                          
 1sjp(B) : **DPYEKIGAELVKEVAKKTtTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELT 
           _________________________________________________________________135_139_______149______________________________________ 

           ________________________________________________________________________________________________________________________ 
 1sjp(A) : EGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLE 
         :                                                                                                                          
 1sjp(B) : EGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLE 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________404_______________________ 
 1sjp(A) : NADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELK 
         :                                                                                                                          
 1sjp(B) : NADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAGGGVTLLQAAPTLDELK 
           ______________________________________________________________________________________________404_______________________ 

           _______________________________________________________________________________________                                  
 1sjp(A) : LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE                                  
         :                                                                                                                          
 1sjp(B) : LEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTE                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
0.1
Closure
(%)
32.1
Bending Residues
( green )
  135 - 136
  139 - 140
  149 - 152
  404 - 405
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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