jsmol/j2s/core/package.js
-- required by ClazzNode ajax=false async=true
jsmol/j2s/core/core.z.js
-- required by ClazzNode ajax=false async=true
jsmol/j2s/J/g3d/PixelatorT.js
-- required by J.g3d.Graphics3D ajax=false async=true
JSmol exec jmolApplet start applet null
Jmol JavaScript applet jmolApplet__170694582743204__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet__170694582743204__)
vwrOptions:
{ "name":"jmolApplet","applet":true,"documentBase":"https://dyndom.cmp.uea.ac.uk/dyndom/dyndomRun.do;jsessionid=24c1d4f74f7d9357aacb7c8ca71d?ddid=FIBRI1R1&action=view","platform":"J.awtjs2d.Platform","fullName":"jmolApplet__170694582743204__","codePath":"https://dyndom.cmp.uea.ac.uk/dyndom/jsmol/j2s/","display":"jmolApplet_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"170694582743204","bgcolor":"#FFFFFF" }
setting document base to "https://dyndom.cmp.uea.ac.uk/dyndom/dyndomRun.do;jsessionid=24c1d4f74f7d9357aacb7c8ca71d?ddid=FIBRI1R1&action=view"
(C) 2012 Jmol Development
Jmol Version: 14.2.12_2015.02.11 2015-02-11 06:00
java.vendor: Java2Script (HTML5)
java.version: 2014-12-19 08:17:57 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet (signed)
jsmol/j2s/core/corescript.z.js
-- required by ClazzNode ajax=true async=false
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #FFFFFF
backgroundColor = "#FFFFFF"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet__170694582743204__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(dyndommorphdb/FIBRI1R1.pdb)
FileManager opening 1 https://dyndom.cmp.uea.ac.uk/dyndom/dyndommorphdb/FIBRI1R1.pdb
The Resolver thinks Pdb
jsmol/j2s/core/corebio.z.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/J/render/MeshRenderer.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
jsmol/j2s/J/shape/Mesh.js
-- required by J.renderbio.BioShapeRenderer ajax=true async=false
jsmol/j2s/J/renderbio/RocketRenderer.js
-- required by J.renderbio.RocketsRenderer ajax=true async=false
#jmolScript: select all; color grey; background white;
#jmolScript: select 321- 459
#jmolScript: color [0 ,0 ,255]
#jmolScript: select 460- 481
#jmolScript: color [255,0 ,0 ]
#jmolScript: select 484- 499
#jmolScript: color [0 ,0 ,255]
#jmolScript: backbone 100;
#jmolScript: select 500- 513
#jmolScript: color [255,0 ,0 ]
#jmolScript: backbone 100;
#jmolScript: select 389- 460
#jmolScript: color [0 ,255,0 ]
#jmolScript: select all
#jmolScript: anim mode loop 0.5 0.5;anim on;
#jmolScript: set echo top left;color echo [x0D0D99];echo "DynDom"
#jmolScript: set antialiasDisplay ON
ADENOVIRUS 16-APR-04 1V1H
ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE
BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A
LINKER
found biomolecule 1: A, B, C
biomolecule 1: number of transforms: 1
found biomolecule 2: D, E, F
biomolecule 2: number of transforms: 1
jsmol/j2s/core/coresym.z.js
-- required by ClazzNode ajax=true async=false
Time for openFile(dyndommorphdb/FIBRI1R1.pdb): 1011 ms
reading 18240 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
24 models in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: B
model 1.2 alternative locations: B
model 1.3 alternative locations: B
model 1.4 alternative locations: B
model 1.5 alternative locations: B
model 1.6 alternative locations: B
model 1.7 alternative locations: B
model 1.8 alternative locations: B
model 1.9 alternative locations: B
model 1.10 alternative locations: B
model 1.11 alternative locations: B
model 1.12 alternative locations: B
model 1.13 alternative locations: B
model 1.14 alternative locations: B
model 1.15 alternative locations: B
model 1.16 alternative locations: B
model 1.17 alternative locations: B
model 1.18 alternative locations: B
model 1.19 alternative locations: B
model 1.20 alternative locations: B
model 1.21 alternative locations: B
model 1.22 alternative locations: B
model 1.23 alternative locations: B
model 1.24 alternative locations: B
Default Van der Waals type for model set to Jmol
18240 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
ADENOVIRUS 16-APR-04 1V1H
ADENOVIRUS FIBRE SHAFT SEQUENCE N-TERMINALLY FUSED TO THE
BACTERIOPHAGE T4 FIBRITIN FOLDON TRIMERISATION MOTIF WITH A
LINKER
found biomolecule 1: A, B, C
found biomolecule 2: D, E, F
Adding embedded #jmolscript: select ({730:759});backbone only;select ({1490:1519});backbone only;select ({2250:2279});backbone only;select ({3010:3039});backbone only;select ({3770:3799});backbone only;select ({4530:4559});backbone only;select ({5290:5319});backbone only;select ({6050:6079});backbone only;select ({6810:6839});backbone only;select ({7570:7599});backbone only;select ({8330:8359});backbone only;select ({9090:9119});backbone only;select ({9850:9879});backbone only;select ({10610:10639});backbone only;select ({11370:11399});backbone only;select ({12130:12159});backbone only;select ({12890:12919});backbone only;select ({13650:13679});backbone only;select ({14410:14439});backbone only;select ({15170:15199});backbone only;select ({15930:15959});backbone only;select ({16690:16719});backbone only;select ({17450:17479});backbone only;select ({18210:18239});backbone only;select *; select all; color grey; background white; select 321- 459; color [0 ,0 ,255]; select 460- 481; color [255,0 ,0 ]; select 484- 499; color [0 ,0 ,255]; backbone 100; select 500- 513; color [255,0 ,0 ]; backbone 100; select 389- 460; color [0 ,255,0 ]; select all; anim mode loop 0.5 0.5;anim on; set echo top left;color echo [x0D0D99];echo "DynDom"; set antialiasDisplay ON
24 models
jsmol/j2s/J/thread/AnimationThread.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/J/g3d/HermiteRenderer.js
-- required by ClazzNode ajax=true async=false
jsmol/j2s/core/coretext.z.js
-- required by ClazzNode ajax=true async=false
DynDom
1v1h (A)
1v1h (A)
1v1h (A)
1v1i (C)
1v1i (C)
1v1i (C)
Script completed
Jmol script terminated
