Formamidopyrimidine-Dna Glycosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Formamidopyrimidine-Dna Glycosidase
  Conformer 1
(PDB)
2f5q (A)
  Conformer 2
(PDB)
2f5p (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 130 0.5   4 - 132   214 - 214
2 120 0.69   133 - 213   215 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 2f5q(A) : PQLPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYA 
         :                                                                                                                          
 2f5p(A) : PELPEVETIRRTLLPLIVGKTIEDVRIFWPNIIRHPRDSEAFAARMIGQTVRGLERRGKFLKFLLDRDALISHLRMEGRYAVASALEPLEPHTHVVFCFTDGSELRYRDVRKFGTMHVYA 
           ________________________________________________________________________________________________________________________ 

           ________132____________________________________________________________________________211______________________________ 
 2f5q(A) : KEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYV 
         :                                                                                                                          
 2f5p(A) : KEEADRRPPLAELGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVM-------------------qHHLYV 
           ________132____________________________________________________________________________211______________________________ 

           _________________________________                                                                                        
 2f5q(A) : YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR                                                                                        
         :                                                                                                                          
 2f5p(A) : YGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQR                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.9
Translation
(A)
0.0
Closure
(%)
35.1
Bending Residues
( green )
  132 - 133
  211 - 215
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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