DynDom - Protein Domain Motions

Myosin Light Chain Kinase, Green Fluorescent Protein, Calmodulin Chimera

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Myosin Light Chain Kinase, Green Fluorescent Protein, Calmodulin Chimera
Conformer 1 (PDB)	3ekj (A)
Conformer 2 (PDB)	3ekh (A)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	41	1.96	307 - 330 357 - 377
2	223	0.38	63 - 302
3	26	1.27	331 - 356

Sequence

`________________________________________________________________________________________________________________________` `3ekj(A) : *******************LENVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLsMVSKGEELFTGVV` `:` `3ekh(A) : SSRRKWNKTGHAVRAIGRLSSLENVYIMADKQKNGIKANFKIRHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSVQSKLSKDPNEKRDHMVLLEFVTAAGITL--vSKGEELFTGVV` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `3ekj(A) : PILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLvQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN` `:` `3ekh(A) : PILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLvQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGN` `________________________________________________________________________________________________________________________` `_____301__________________________330_______________________356_________________________________________________________` `3ekj(A) : ILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGGITTKQLGTVMRSLGQNPTEAELQDMINEV----GgTIDFPQFLTMMARKM******************************` `:` `3ekh(A) : ILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARWMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT` `_____301__________________________330_______________________356_________________________________________________________` `____________________________________` `3ekj(A) : **********************************` `:` `3ekh(A) : NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT` `____________________________________`

Morph

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	118.2
Translation (A)	0.5
Closure (%)	98.7
Bending Residues ( green )	301 - 307
Bending Region Analysis

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( yellow )	3
Rotation Angle (deg)	55.2
Translation (A)	2.3
Closure (%)	94.8
Bending Residues ( green )	330 - 334 356 - 365
Bending Region Analysis