Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		2v52 (B)
  Conformer 2
(PDB) 		6vao (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 196 0.77   72 - 75   107 - 110   141 - 153   155 - 159   162 - 176   181 - 335
2 153 0.86   9 - 71   76 - 106   111 - 140   154 - 154   160 - 161   177 - 180   336 - 372

Sequence


           _______________________________________________________71________________________________106_110________________________ 
 2v52(B) : DETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRkDSYVGDEAQS-iLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV 
         :                                                                                                                          
 6vao(B) : **TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--sYVGDEAQSKiLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYV 
           _______________________________________________________71________________________________106_110________________________ 

           ___140__________153___159______________176_180__________________________________________________________________________ 
 2v52(B) : AIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNER 
         :                                                                                                                          
 6vao(B) : AIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNER 
           ___140__________153___159______________176_180__________________________________________________________________________ 

           ______________________________________________________________________________335_______________________________________ 
 2v52(B) : FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 
         :                                                                                                                          
 6vao(B) : FRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKC 
           ______________________________________________________________________________335_______________________________________ 

           _                                                                                                                        
 2v52(B) : F                                                                                                                        
         :                                                                                                                          
 6vao(B) : *                                                                                                                        
           _                                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		9.9
Translation
(A) 		-0.5
Closure
(%) 		40.4
Bending Residues
( green ) 		  71 - 76
  106 - 107
  110 - 111
  140 - 141
  153 - 155
  159 - 162
  176 - 177
  180 - 181
  335 - 336
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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