Actin, Alpha Skeletal Muscle

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin, Alpha Skeletal Muscle
  Conformer 1
(PDB) 		8a2t (C)
  Conformer 2
(PDB) 		6vao (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 199 0.74   137 - 139   141 - 336
2 141 0.93   8 - 136   140 - 140   337 - 362

Sequence


           ________________________________________________________________________________________________________________________ 
 8a2t(C) : *TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMqKDSYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 
         :                                                                                                                          
 6vao(B) : TTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR--------sYVGDEAQSK--iLTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFN 
           ________________________________________________________________________________________________________________________ 

           _____136________________________________________________________________________________________________________________ 
 8a2t(C) : VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI 
         :                                                                                                                          
 6vao(B) : VPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVI 
           _____136________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________336________________________________ 
 8a2t(C) : TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS 
         :                                                                                                                          
 6vao(B) : TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPS 
           _____________________________________________________________________________________336________________________________ 

           _______                                                                                                                  
 8a2t(C) : IVHRKCF                                                                                                                  
         :                                                                                                                          
 6vao(B) : IVHRKC*                                                                                                                  
           _______                                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.6
Translation
(A) 		-0.6
Closure
(%) 		2.4
Bending Residues
( green ) 		  136 - 150
  336 - 337
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download