Gamma-Aminobutyric Acid Type B Receptor Subunit 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Gamma-Aminobutyric Acid Type B Receptor Subunit 1
  Conformer 1
(PDB) 		4mqf (A)
  Conformer 2
(PDB) 		4ms3 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 203 0.87   52 - 172   313 - 415
2 184 0.58   173 - 312   416 - 459

Sequence


           ________________________________________________________________________________________________________________________ 
 4mqf(A) : SERRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNSRRDILPDYELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
         :                                                                                                                          
 4ms3(A) : **RRAVYIGALFPMSGGWPGGQACQPAVEMALEDVNS-------yELKLIHHDSKCDPGQATKYLYELLYNDPIKIILMPGCSSVSTLVAEAARMWNLIVLSYGSSSPALSNRQRFPTFF 
           ________________________________________________________________________________________________________________________ 

           __172___________________________________________________________________________________________________________________ 
 4mqf(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
         :                                                                                                                          
 4ms3(A) : RTHPSATLHNPTRVKLFEKWGWKKIATIQQTTEVFTSTLDDLEERVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGWYADNWFKIY 
           __172___________________________________________________________________________________________________________________ 

           ______________________312_______________________________________________________________________________________410_____ 
 4mqf(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEETGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
         :                                                                                                                          
 4ms3(A) : DPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRL------tGGFQEAPLAYDAIWALALALNKTSrLEDFNYNNQTITDQIYRAMNSSSFEGVSGHVVFDASGS 
           ______________________312_______________________________________________________________________________________410_____ 

           __________________________________________________                                                                       
 4mqf(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDY****                                                                       
         :                                                                                                                          
 4ms3(A) : RMAWTLIEQLQGGSYKKIGYYDSTKDDLSWSKTDKWIGGSPPADDYKDDD                                                                       
           __________________________________________________                                                                       

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.0
Translation
(A) 		-0.3
Closure
(%) 		98.8
Bending Residues
( green ) 		  172 - 173
  312 - 313
  410 - 416
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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